Simulating property exchange in estuarine ecosystem models at ecologically appropriate scales

A computational scheme has been developed and tested to simulate property exchange by advection and dispersion in estuaries at time and space scales that are well suited to ecological and management simulations, but are coarse relative to the demands of physical hydrodynamic models. An implementation of the Regional Ocean Model System (ROMS) for the Providence River and Narragansett Bay (RI, USA) was used to determine property exchanges between the spatial elements of an ecological box model. The basis for the method is the statistical tabulation of numerical dye experiments done with the full ROMS physical model. The ROMS model domain was subdivided into fifteen coarse boxes, each with two vertical layers, defining 30 elements that were used for the box model simulations. Dye concentrations were set to arbitrary initial concentrations for all ROMS grids in the large elements, and the ROMS model was run for 24 h. The final distribution of the dye among the elements was used as a tracer for property exchange over that day and was used to develop an exchange matrix. Box model predictions of salinity over 77 days in each element compared favorably with ROMS simulated salinity averaged over the same spatial elements, although the disparity was greater in areas where large river inflows caused strong gradients in ROMS within elements assumed to be homogeneous in the box model. The 77-day simulation included periods of high and low river flow. Despite the large size of the spatial elements, dispersion artifacts were small, much less than the modeled daily exchanges. While others have taken a similar approach, we found a number of theoretical and practical considerations deserved careful attention for this approach to perform satisfactorily. Whereas the full ROMS model takes 9 days on a powerful computing cluster to compute the physics simulation for 77 days, the box model simulates physics and biology for the same interval in 5 s on a personal computer, and a full year in under 1 min. The exchange matrix mixing model is a fast, cost effective, and convenient way to simulate daily variation of complex estuarine physics in ecological modeling at appropriate scales of space and time.     

Estimating digestion time in gelatinous predators: a methodological comparison with the scyphomedusa Aurelia aurita

In order to quantify the trophic impact of gelatinous predators, digestion time estimates are commonly applied to counts of prey in the guts. Three primary approaches are used, the Manual-feeding, Natural-feeding and Steady-state methods; these differ in methodology and their underlying assumptions. The criteria used to define the end-point of digestion, and the resolution at which digestion progress is observed, also vary across studies. To understand the impact of such differences, we estimate digestion times of the scyphomedusa Aurelia aurita fed adult females of the copepod Acartia tonsa using these various approaches. We find ~fourfold differences which can be attributed to bias towards the slowest rates of digestion by some end-point criteria, and overestimation from low observation resolution. Artificial manipulation and the degree to which swimming and feeding behaviour are natural may also influence estimates. We provide recommendations for those quantifying digestion times of Aurelia aurita medusae and gelatinous predators.     

Leading from the front? Social networks in navigating groups

In many group-living animals, leadership by only a fraction of the group members can be important for group navigation. It has been shown that subgroups of informed individuals can steer the remainder of the group without direct communication, resolving conflicts of interest through individual-to-individual interactions. We present a model for the navigation of collectively moving groups that includes preferential interactions between individuals as a way of imposing social network structures, known to be present in many species. We show that effective leadership can occur when leaders do not occupy frontal spatial positions and when navigation tendency is appropriately balanced with social position. Our model also shows that small minorities can dominate movement decisions if they have navigational knowledge combined with influential social network positions. Our findings highlight the mechanistic importance of social networks for the movement decisions of animal groups. We discuss the implications of our research for interpreting empirical observations.     

The On-Ranch Economics of Riparian Zone Cattle Grazing Management

A simulation model of a cattle ranch based in southern Alberta, Canada was developed to evaluate the on-ranch economics of adopting different grazing management strategies to improve riparian grazing capacity in natural grass rangeland. Under low-cost scenarios, there are positive economic incentives to adopt strategies to maintain riparian zones that already have high grazing capacity. However, riparian zones that have declined to moderate or low grazing capacity may require additional economic incentives to encourage ranches to adopt more costly management strategies to improve the grazing capacity. The economic incentives to adopt costly management strategies are highly sensitive to the size and shape of the riparian zone and rates of grazing capacity decline or improvement.     

Impacts of nutrient additions and digging for human waste disposal in natural environments, Tasmania, Australia

Very little research has been undertaken on the impacts of human toilet waste disposal in non-serviced sites in the wild. The objective of the present project was to determine the relative impacts of the mechanical disturbance of digging during the burial of toilet waste (faeces and toilet paper), and urination, on Tasmanian vegetation types that occur in areas used for wild country camping, in order to develop appropriate guidelines. The mechanical disturbance of digging cat-holes 15 cm deep, typical of those used for toilet disposal in the Tasmanian wild, had largely negative effects on the growth of a few native plant species. These effects were of little or no conservation significance. The nutrient additions simulated by the addition of artificial urine to undug ground and dug ground had largely positive effects on nine distinct types of native vegetation, encouraging the growth of many plant species at many sites, while discouraging the growth of moss at one site. No weed species found at any of the sites were significantly affected by the treatments. Thus, it appears that scattered disposal of urine, even combined with digging, is unlikely to present a major conservation problem in the Tasmania's wild country, and that present guidelines are appropriate, where achievable.     

BIOLOGICAL AND ECONOMIC IMPLICATIONS OF SACRAMENTO WATERSHED MANAGEMENT OPTIONS1

ABSTRACT: This paper brings together spatially and temporally explicit mechanistic models of hydrodynamic, water quality, and ecological processes with an economic model to examine water management alternatives for California's Sacramento River and Delta ecosystem, a large‐scale watershed. Overallocated water supplies in most years, combined with increasing demand for water for environmental purposes, have created a politically charged atmosphere and a need for quantitative assessment of the implications of policy alternatives. By developing and analyzing a common set of policy scenarios, this integrated framework allows us to consider tradeoffs between agricultural economic factors, water quality, and population dynamics for two at‐risk fish species. We analyze two rather extreme types of policy options; one involves structural modifications to change the flow of water within the watershed but no change in water diversions, while the other reallocates water from agricultural users to fish and wildlife. Results suggest that substantial environmental improvements could be made at a relatively modest cost to farmers (1 to 4 percent reductions in revenues) but that those costs could be significant locally. In addition to tradeoffs between farmers and environmental interests, results suggest that policy makers may need to balance competing environmental objectives.     

Visualisation of natural aquatic colloids and particles -- a comparison of conventional high vacuum and environmental scanning electron microscopy

The applicability of environmental scanning electron microscopy (ESEM; imaging of hydrated samples) and conventional high vacuum scanning electron microscopy (SEM; imaging of dried samples at high vacuum) for the observation of natural aquatic colloids and particles was explored and compared. Specific attention was given to the advantages and limitations of these two techniques when used to assess the sizes and morphologies of complex and heterogeneous environmental systems. The observation of specimens using SEM involved drying and coating, whereas ESEM permitted their examination in hydrated form without prior sample preparation or conductive coating. The two techniques provided significantly different micrographs of the same sample. SEM provided sharper images, lower resolution limits (10 nm or lower), but more densely packed particles, suggesting aggregation, and different morphological features than ESEM, suggesting artefacts due to drying. ESEM produced less easily visualised materials, more complex interpretation, slightly higher resolution limits (30-50 nm), but these limitations were more than compensated for by the fact that ESEM samples retained, at least to some extent, their morphological integrity. The results in this paper show that SEM and ESEM should be regarded as complementary techniques for the study of aquatic colloids and particles and that ESEM should be more widely applied to aquatic environmental systems than hitherto.     

Evolution of clog formation with time in columns permeated with synthetic landfill leachate

Laboratory column tests conducted to gain insight regarding the biological and chemical clogging mechanisms in a porous medium are presented. To seed the porous medium with landfill bacteria, a mixture of Keele Valley Landfill and synthetic leachate permeated through the column under anaerobic conditions for the first 9 days of operation. After this, 100% synthetic leachate was used. The synthetic leachate approximated Keele Valley Landfill leachate in chemical composition but contained negligible suspended solids and bacteria compared with real leachate. The removal of volatile fatty acids (VFAs), primarily acetate, in leachate as it passed through the medium was highly correlated with the precipitation of calcium carbonate (CaCO(3(s))) from solution. The columns experienced a decrease in drainable porosity from an initial value of about 0.38 to less than 0.1 after steady state chemical oxygen demand (COD) removal, resulting in a five-order magnitude decrease in hydraulic conductivity. The decrease in drainable porosity prior to steady state COD removal was primarily due to the growth of a biofilm on the medium surface. After steady state COD removal, calcium precipitation was at least equally responsible for the decrease in drainable porosity as biofilm growth. Clog composition analyses showed that CaCO(3(s)) was the dominant clog constituent and that 99% of the carbonate in the clog material was bound to calcium.     

Population structure of short-beaked common dolphins (<Emphasis Type="Italic">Delphinus delphis</Emphasis>) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers

The understanding of population structure and gene flow of marine pelagic species is paramount to monitoring, management and conservation studies. Such studies are often hampered by the potentially high dispersal behavior of the species, the lack of obvious geographical barriers in the marine environment and the scarce sample availability. Short-beaked common dolphins (Delphinus delphis) are widespread in coastal and open-ocean habitats of the North Atlantic Ocean, nevertheless population structure and migratory patterns are poorly understood. Furthermore, concern has been raised about the status of the species because large numbers of dolphins have been taken incidentally in several fisheries throughout the North Atlantic in the past decades. In the present study, a large number of individual samples were obtained from seasonal and spatial aggregations of common dolphins from western (wNA) and eastern North Atlantic (eNA) regions, mostly using opportunistic sampling (i.e. from incidental entanglement in fishing gear or beach-cast carcasses). Genetic variability was investigated using nuclear (14 microsatellite loci) and mitochondrial (360 bp of the control region) genetic markers. Levels of genetic diversity were relatively high in all sampled areas and no evidence of recent reduction of effective population size (i.e. bottleneck) was detected at the nuclear loci. Significant population structure was detected between the two main regions (wNA and eNA) where it appeared to be more pronounced at mitochondrial (F _ST = 0.018, P < 0.001) than nuclear markers (F _ST = 0.005, P < 0.05), indicating the presence of at least two genetically distinct populations of common dolphins in the North Atlantic Ocean. In contrast, no significant genetic structure was detected between temporal aggregations of dolphins from within the same region, suggesting possible seasonal movement patterns at a regional scale. The observed levels of genetic differentiation between classes of markers are discussed here as a possible consequence of migratory patterns or recent population subdivision. An erratum to this article can be found at     

Effects of river otter activity on terrestrial plants in trophically altered Yellowstone Lake

Animals that deposit aquatically derived nutrients on terrestrial landscapes link food webs and affect a variety of in situ processes. This phenomenon, however, is poorly documented in freshwater habitats, especially where species introductions have drastically changed an ecosystem's trophic structure. In this study, we used stable isotopes to document water-to-land nutrient transport by river otters (Lontra canadensis) around Yellowstone Lake, an ecosystem recently altered by nonnative species invasions. We then investigated the effects of otter fertilization on plant growth and prevalence at latrine (scent-marking) sites and evaluated how the recent changes to the lake's food web could influence these plant responses. Values of delta15N were higher on latrines compared to non-latrine sites in five of seven sample plant taxa. Additionally, latrine grasses had higher percentage N than those from non-latrines. Foliar delta15N positively related to fecal deposition rate for some plants, indicating that increased otter scent-marking led to a rise in these N values. Logistic regression models indicated that otters selected for well-shaded latrines with access to foraging. Atypical latrines, misclassified as non-latrines by the regression models, had values of delta15N similar to correctly classified latrines, suggesting that site effects alone cannot explain elevated N values at otter latrine sites. No difference in plant diversity or percent cover of N-fixing taxa occurred between latrine and nonlatrine sites, though specific genera did differ between site types. Measurements of shoot lengths indicated increased growth of some latrine currants (Ribes sp.). In Yellowstone Lake, a twofold reduction in otter numbers could result in an even greater decline in nutrient deposition at latrines, as otters may become less social in a system with decreased prey availability. Our results highlight the role of animals in linking aquatic and terrestrial habitats in inland freshwater systems and suggest that ongoing changes in the trophic structure of Yellowstone Lake could have unexpected ramifications well beyond the lake itself.